Papers in Refereed Journals

(2010) Li, B., Kim, M.K., Altman, N.S. On dimension folding of matrix or array valued statistical objects. Annals of Statistics,. 38, 1094-1121; doi:10.1214/09-AOS737full text

(2010) Altman, N.S., Wang, Q., Karwa, V. and Slavkovic, S. Resolving Isoform Expression using Digital Gene Expression Data.  (Journal of the Indian Society of Agricultural Statistics, special issue on Statistical Genomics.)JISAS

(2009) André S. Chanderbali, Victor A. Albert, Jim Leebens-Mack, Naomi S. Altman, Douglas E. Soltis, and Pamela S. Soltis .Transcriptional signatures of ancient floral developmental genetics in avocado (Persea americana; Lauraceae " PNAS,  106, 8929-8934; doi:10.1073/pnas.0811476106

(2009) Wall, P.K.,  J. H. Leebens-Mack, A. Barakat, A. Chanderbali, L. Landherr, N. Altman, J. E. Carlson, H. Ma, W. Miller, S. Schuster, D.E. Soltis, P.S. Soltis, and C.W. dePamphilis. Comparison of next generation sequencing technologies for transcriptome characterization. BMC Genomics, 10:347.full text

(2009) Philip J. Jensen,×Izabela Makalowska, Naomi Altman, Gennaro Fazio, Craig Praul, Siela N. Maximova, Robert M. Crassweller, James W. Travis, Timothy W. McNellis Rootstock-regulated gene expression. Tree Genetics and Genomes, 6, 1614-2942, doi: 10.1007/s11295-009-0228-7.

(2009) Han, X., X. Wu, W.-Y. Chung, T. Li, A. Nekrutenko, N. Altman, G. Chen, and H. Ma, Transcriptome of embryonic and neonatal mouse cortex by high-throughput RNA sequencing. Proceedings of the National Academy of Sciences, vol. 106, no. 31, pp. 12741-6. full text

(2008) Soltis, D. E., V. A. Albert, J. Leebens-Mack, J. Palmer, R. Wing,  C. dePamphilis, H. Ma, J. E. Carlson,  N. Altman, S. Kim, K. Wall, A. Zuccolo, P. Soltis.   A reference genome for all plant biology: The Amborella Genome Initiative. Genome Biology, 9, 402.

(2008) Han, B., Altman, N.S., Mong, J.A., Klein, L.C., Pfaff, D.W. and Vandenbergh, D. Comparing Quantitative Trait Loci and Gene Expression Data Associated with a Complex Trait, Advances in Bioinformatics. Hindawi Press

(2007) William R. Evans, Yukio Akashi, Naomi Altman, and Albert Manville.  Response of night migrating birds in cloud to colored and flashing light North American Bird, Vol 60, No 4, p. 476-488.

(2007) Vineet Sangar, Daniel J. Blankenberg, Naomi Altman and Arthur M. Lesk. Quantitative Sequence Function Relationships in Proteins Based on the Gene Ontology Functional Classification. BMC Bioinformatics

(2007) Madsen, L., Ruppert, D. and Altman, N.S.,  Regression with Spatially Misaligned Data Environmetrics www.environmetrics.org

(2007) P. Kerr Wall, Jim Leebens-Mack, Kai Müller, Dawn Field, Naomi S. Altman, Claude W. dePamphilis. PlantTribes:  A gene and gene family resource for comparative genomics in plants.  Nucleic Acid Research, 36, 970-976.NAR

(2007) Soltis D.E., H. Ma, M.W. Frohlich, P.S. Soltis, V.A. Albert, D.G. Oppenheimer, N.S. Altman, C.W. dePamphilis and J.H. Leebens-Mack. (2007) The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression. Trends in Plant Science 12(8):358-367. ScienceDirect

(2006) Duarte, J., Cui,L., Wall,K., Zhang, Q., Zhang, X., Leebens-Mack, J., Ma,H., Altman, N.S., and dePamphilis, C.  Strong evidence for expression pattern shifts that support maintenance in duplicated regulatory genes Molecular Biology and Evolution 2006, 23(2):469-478. 

(2006) Naomi Altman, Jim Leebens-Mack, Laura Zahn, André Chanderbali,
Donglan Tian, Lillian Werner, Hong Ma, and Claude dePamphilis.  Behind the Scenes: Planning a Multispecies Microarray Experiment, Chance, Vol 19, No. 3, p. 27-38

(2006) Clark, C.W.; Altman, N.S.; Acoustic detections of blue whale (Balaenoptera musculus) and fin whale (B. physalus) sounds during a SURTASS LFA exercise, IEEE Journal of Oceanic Engineering,Vol 31, No. 1, p. 120 – 128.IEEE Ocean Engineering

(2006) Altman, N.S., Hua, J. Extending the loop design for 2-channel microarray experiments Genetical Research, Vol 88, No. 3, p. 153-163. Cambridge

(2005) Altman, N.S. Replication, Variation and Normalization in Microarray Experiments Applied Bioinformatics, 4, 33-44. pdf

(2005) Zhang, X., Zhang, D., Feng, B., Altman, N.S., Ma, H. Genome-wide Expression Profiling and Identification of Gene Activities during Early Flower Development in Arabidopsis,  Plant Molecular Biology, 58, 401-419.

(2005) Walters, E., Altman, N.S., Elnitski, L. Clustering of Gene Locations, J. Computational Statistics and Data Analysis, 50, 2920-2932.

(2004) Altman N.S. and Villarreal, J. Self-Modeling Regression with Random Effects using Penalized Splines, Canadian Journal of Statistics, 32, 251-268. jstor

(2004) Wang G., Kong H., Sun Y., Zhang X., Zhang W., Altman N.S., dePamphilis, C.W., Ma, H. Genome-wide analysis of the cyclin family in Arabidopsis and comparative phylogenetic analysis of plant cyclin-like proteins, Plant Physiology, 135, 1084-1099.

(2002) Flecker, A. S., Taylor, B. W., Bernhardy, E. S., Hood, J., Cornwell, W. K., Cassatt, S. R., Vanni, M. J., Altman, N.S.  Interactions Between Herbivorous Fishes and Limiting Nutrients in a Tropical Stream Ecosystem. Ecology, 83, 1831-1844.  pdf

(2002) Bargo, F., Muller, L.  and Altman, N.S.  Milk Response to Bovine Somatotropin of High-Producing Dairy Cows with Three Different Feeding Systems Combining Pasture and Total Mixed Rations, The Professional Animal Scientist

(2001) Ahrens, C. Altman, N.S., Casella, G.C., Malaika, E., Hwang, J.T., Staudenmayer, J., Stefanescu, C.  Leukemia Clusters and TCE Waste Sites in Upstate New York:  How Adding Covariates Changes the Story.  Environmetrics, 12, 659-672.

(2001) Altman, N.S., Bernstein, E, Cottrell, K, Dhondt, A.A., Hochachka, W., Slothower, R. Measuring Bird Migration Using Spatial and Temporal Counts.  Chance, 14, 7-14.

(2001) Altman, N.S. Discussion of " Estimation of Fetal Growth and Gestation in Bowhead Whales" by C. Shane Reese, James A. Calvin, John. C. George, and Raymond J. Tarpley.  (JASA Invited Discussion Paper) JASA, 96, 923-925jstor

(2001) Altman, N.S. and Sullivan, P. Discussion of "What shall we teach in environmental statistics?" by Walter Piegorsch and Don Edwards. (Environmental and Ecological Statistics Invited Discussion), 9, 139-140.

(2000) Altman, N.S.  Krige, Smooth, Both or Neither? (with discussion) Australian and New Zealand Journal of Statistics, 42, 441-461 Wiley

(1999) Johnson, K.W. and Altman, N.S.,  Canonical Correspondence Analysis as an Approximation to Gaussian Ordination. Environmetrics, 10, 39-52.wiley

(1998) Altman, N.S. and MacGibbon, B.  Consistent Bandwidth Selection for Kernel Binary Regression, Journal of Statistical Planning and Inference, 70, 121-137.

(1997) Federer, Walter T., Newton, Elizabeth A. and Altman, Naomi S.,  Combining Standard Block  Analyses With Spatial Analyses Under a Random Effects Model.  in Modeling Longitudinal and Spatially Correlated Data: Methods, Applications, and Future Directions. Gregoire, Brillinger, Diggle, Russek-Cohen, Warren, Wolfinger eds. Springer-Verlag (Berlin; New York): 373--386.

(1997) Hobert, J.P.,  Altman, N.S. and Schofield, C.L.  Spatial Analysis of  the Fish Species Richness of Adirondack Lakes:  Applications of Geostatistics and Nonparametric Regression.  Journal of the American Statistical Association, 92, 846-854. jstor

(1997) Altman, N.S. and Léger, C.  On the Optimality of Prediction Based Selection Criteria and the Convergence Rates of Estimators.  Journal Royal Statistical Society, Series B, 59, 205-216.jstor

(1995) Altman, N.S. and Casella, G.  Nonparametric Empirical Bayes Growth Curve Analysis.  Journal of the American Statistical Association, 90, 508-515. jstor

(1995) Altman, N.S. and Léger, C.  A Note on Bandwidth Selection in Kernel Distribution Function Estimation.  Journal of Statistical Planning and Inference, 46, 195-214.

(1994) Kuesten, C.L., McLellan, M.R. and Altman, N.S.,  Computerized Panel Training: Effects of Using Graphic Feedback on Scale Usage.  Journal of Sensory Studies,  9, 413-444.

(1994) Kuesten, C.L., McLellan, M.R. and Altman, N.S.,  Influence of Computerized Panel Training on Contextual Effects.  Journal of Sensory Studies, 9, 401-412.

(1994) Ramsay, J.O., Altman, N.S. and Bock, R.D.  Variation in Height Acceleration in the Fels Growth Data.  Canadian Journal of Statistics, 22, 89-102.jstor

(1994) Todhunter, R.J., Wootton, J.W., Altman, N.S., Lust, G., and Minor, R.R. Cross-validation to Determine the Best Cyanogen Bromide Peptide Ratios to Measure the Proportion of Type II Collagen in Equine Meniscus, Articular Cartilage, and Cartilage Repair Tissue.   Analytical Biochemistry, 216, 195-204.

(1993) Altman, N.S., Estimating Error Correlation in Nonparametric Regression Models.  Statistics and Probability Letters, 18, 213-218. ScienceDirect

(1993) Altman, N.S. and Paulson, C., Some Remarks about the Gasser-Sroka-Jennen-Steinmetz Variance Estimator.  Communications in Statistics, 22, 1045-1052.informaworld

(1993) Léger, C. and Altman, N.S.,  Assessing Influence in Variable Selection  Problems.  Journal of the American Statistical Association, 88, 547-556.jstor

(1993) Gray, S.M., Smith, D. and Altman, N.S.,  Barley Yellow Dwarf Virus Isolate-Specific Resistance in Spring Oats Reduced Virus Accumulation and Aphid Transmission. Phytopathology, 83, 716-720.

(1993) Todhunter, R.J., Altman, N.S., Kallfelz, F.A., Nersesian, D.P., Lust, G. Use of Scintimetry to Assess Effects of Exercise and Polysulfated Glycosaminoglycan on Equine Carpal Joints With Osteochondral Defects.  American Journal of Veterinary Research, 54, 997-1006.AGRIS

(1993) Langston, S.W., Altman, N.S., and Hotchkiss, J.H.   Within and Between  Sample Differences in Salmonella Enteritidis and Aerobic Plate Counts in Chicken Meat Stored in Air and Modified Atmosphere.  International Journal of Food Biology, 18, 43-52.

(1992) Altman, N.S.,  An Iterated Cochrane-Orcutt Procedure for Nonparametric Regression.  Journal of Statistical Computation and Simulation, 40, 93-108.informaworld

(1992) Altman, N.S.,  An Introduction to Kernel and Nearest Neighbors Nonparametric Regression.  The American Statistician, 46, 175-185.   jstor

(1991) Altman, N.S. et al.  Meeting the needs of New Statistical Researchers.  Statistical Science, 6, 163-174. jstor

(1991) Altman, N. S., Discussion of  “Some Tools for Functional Data Analysis”.  Journal of the Royal Statistical Society, Ser.  B. 53, 566.

(1991) Gray, S.M., Power, A.G., Smith, D.M., Seaman, A.J., Altman, N.S.  Aphid Transmission of Barley Yellow Dwarf Virus:  Acquisition Access Periods and Virus Concentration Requirements.  Vector Relations, 81,  539-545. pdf

(1990) Altman, N.S, Kernel Smoothing of Data with Correlated Errors.   Journal of the American Statistical Association, 85, 749-758   jstor

(1990) Wimpfheimer, L., Altman, N.S. and Hotchkiss, J.H., Growth of Listeria monocytogenes or Aerobic Spoilage Organisms in Raw Chicken Packaged in Modified Atmospheres and Air.   International Journal of Food Microbiology, 11, 205-214. ScienceDirect

(1988) Altman, N.S. Bit-wise Behavior of Random Number Generators.  SIAM Journal of Scientific and Statistical Computing, 941-949. SIAM


Published Proceedings

(2004) Altman, N.S. Extending the Loop Design for Microarray Experiments Computer Science and Statistics: Proceedings of the 33rd Symposium on the Interface of Computing Science and Statistics

(2004) Walters, E., Altman, N.S., Elnitski, L., Are Gene Locations Clustered on Chromosomes? (Proceedings of the Joint Statistical Meetings)

(2001) Villarreal, J. and Altman N.S. Inference for Self-Modeling Regression with Random Effects. Computer Science and Statistics: Proceedings of the 33rd Symposium on the Interface of Computing Science and Statistics

(1997) Aragaki, A. and Altman, N.S.  Local Polynomial Regression for Binary Response.  Computer Science and Statistics: Proceedings of the 29th Symposium on the Interface,  467-472

(1997) Altman, N.S., Krige, Smooth, Both or Neither. Proceedings of the Biometrics Section of the American Statistical Association,  60-65.

(1996) Altman, N.S.,  Semi-Parametric Methods for Longitudinal Data Analysis. Proceedings of the Biometrics  Section of the American Statistical Association, 49-57.

(1994) Altman, N.S. and Léger, C.  Cross-validation, the Bootstrap, and Related Methods for Tuning Parameter Selection. Proceedings of the Statistical Computing Section of the American Statistical Association, 41-50.

(1994) Léger, C.  and Altman, N.S.  On the Optimality of Prediction Based Selection Criteria and  the Convergence Rates of Estimators   Proceedings of the Statistical Computing Section of the American Statistical Association, 112-117

(1988) Altman, N. S.  Smoothing Data with Correlated Errors.  Computer Science and Statistics: Proceedings of the 20th Symposium on the Interface, 246-253.


Technical Reports

(2000) Staudenmayer, J., Altman, N.S., Balco G., Crainiceanu, C., Gehrels, W.R., Qiu, J, Sullivan, P.  Millenial Scale Sea Level Curve Estimation: smooth segmented regression with measurement error.

(1997) Aragaki, A. and Altman, N.S.,  Local Polynomial Regression for Binary Response. Biometrics Unit Technical Report BU-1379-M, Cornell University

(1994) Altman, N.S. and Léger, C.  Cross-Validation, the Bootstrap and Related Techniques for Tuning Parameter Selection.  Biometrics Unit Technical Report BU-1216-M, Cornell University.

(1992) Altman, N.S. and Ramsay, J.O.  Reducing Bias in Nonparametric Regression Problems Involving Families of Curves.  Biometrics Unit Technical Report BU-1175-M, Cornell University.

(1990) Altman, N.S. et al, Report of the New Researchers' Committee of the IMS.  Biometrics Unit Technical Report BU-1066-M, Cornell University.

(1990) Ward, R.H., Altman, N.S., and Prior, I.A.M., Patterns of Blood Pressure Response in Migrant and Nonmigrant Tokelauans I:  Defining response.  Biometrics Unit Technical Report BU-994-M, Cornell University.

(1990) Altman, N.S., Ward, R.H., and Prior, I.A.M., Patterns of Blood Pressure Response in Migrant and Nonmigrant Tokelauans II: Physiological and Socio-Cultural Correlates of Blood Pressure Response.  Biometrics Unit Technical Report BU-995-M, Cornell University.

(1990) Altman, N.S., Ward, R.H., and Prior, I.A.M., Patterns of Blood Pressure Response in Migrant and Nonmigrant Tokelauans III:  Response in Tokelauan Children. Biometrics Unit Technical Report BU-996-M, Cornell University.

(1987) Altman, N.S.,  Smoothing Data with Correlated Errors.  Ph.D. Thesis, and Department of Statistics, Stanford, Technical Report No. 280.

(1984) Altman, N.S.,  Expert Systems and Statistical Expertise, Part 1: Statistical Expert Systems.  Department of Statistics, Stanford, Technical Report LCS 17.